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How to brew a climate-friendly coffee

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Two young African women collecting red coffee berries from a coffee plant growing in a wild setting in Ethiopia.

Ethiopia is the homeland of arabica coffee (Coffea arabica).Credit: hadynyah/Getty

Researchers are racing to save the engine of scientific discovery — coffee — from the effects of climate change and preserve the livelihoods of farmers who grow the cash crop. Efforts vary from improving the resilience of the two main species, to experimenting with relatives in the Coffea genus, to squeezing more coffee out of current crops with clever chemistry tricks.

Nature | 8 min read

Pigeons live at “the edge of chaos” to maintain their legendary flexibility and adaptability, suggests new research. Scientists presented common pigeons (Columba livia) with five colourful buttons, and pecking any sequence of five resulted in a tasty reward. Despite cutting down the number of sequences they used, the birds never fully gave up on trying new versions, and their favourites fell in and out of favour. The findings run counter to ‘Thorndike’s Law of Effect’ — proposed by psychologist Edward Thorndike in 1905 — that rewarded behaviours become more frequent and less variable.

Scientific American | 6 min read

Reference: Journal of Experimental Psychology: Animal Learning and Cognition paper

Infographic of the week

Flowchart of a drug-discovery pipeline combining humans, AI co-scientists and a system called Robin. It covers research question, literature search, hypothesis ranking, experiment design, bench experiments, data analysis, and triage, with examples such as KIRA6 testing and RNA-seq analysis, forming an iterative loop.

Figure 1 | AI agents enter the biomedical discovery loop. Gottweis et al. and Ghareeb et al. introduce Co-Scientist and Robin, two AI systems in which several agents collaborate to scour the literature, generate biomedical hypotheses and design ways to test them. Examples of how each system fits into the laboratory discovery cycle are shown. Co-Scientist proposed that a small molecule called KIRA6 could be repurposed to treat acute myeloid leukaemia (AML) by selectively killing cancer cells. Robin, which uses three agents (Crow, Falcon and Finch), proposed that drugs called ROCK inhibitors could treat the eye disease dry age-related macular degeneration (dry AMD) by boosting a cellular process called phagocytosis, and analysed the resulting data. The remaining steps rest with human investigators for now, but they could be performed by AI agents and robotic platforms in the future.

Computational biologist Olivier Elemento explores two new papers that test how scientific discovery can be aided by multi-agent AI tools — systems consisting of several autonomous AI agents that cooperate to solve complex problems. ‘Co-Scientist’ proposed that a small molecule called KIRA6 could be repurposed to treat acute myeloid leukaemia (AML) by selectively killing cancer cells. ‘Robin’, which uses three agents (Crow, Falcon and Finch), proposed that drugs called ROCK inhibitors could treat the eye disease dry age-related macular degeneration (dry AMD) by boosting a cellular process called phagocytosis, and analysed the resulting data. (Nature News & Views | 11 min read)

Reference: Nature paper

Features & opinion

In the United States, the range of lone star ticks (Amblyomma americanum) is expanding, and they carry diseases — such as alpha-gal syndrome, which makes people allergic to red meat. In Australia, the same goes for Ixodes holocyclus, known as the paralysis tick because it injects a potent neurotoxin. The scientists working with these ticks sometimes put their own bodies on the line: when allergist and immunologist Thomas Platts-Mills was investigating why a certain cancer drug was suddenly causing reactions in some patients, he tracked the progress of his own tick-induced allergy. “He came in with the ticks in a Tupperware container,” says his colleague Jake Hosen. “And he said, ‘Draw my blood! Draw my blood!’”

The New Yorker | 47 min read (intermittent paywall)

A new documentary called The Endless Frontier “lingers on the everyday realities” that illustrate “the iterative, often frustrating nature of fundamental research”, writes Nature reporter Max Kozlov in his review. The film was conceived as an exploration of how scientists conduct the fundamental research that underpins crucial advances, but the tumult in US science that has been unleashed by the Trump administration has given it a fresh urgency. “The striking refusal of the film to romanticize the scientific process means that viewers get a rare glimpse into the grind it takes simply to keep a laboratory afloat,” Kozlov says.

Nature | 8 min read

Accommodations for neurodivergent students often focus on aspects such as the time needed to take exams. But “in our experience, the biggest barriers to succeeding in academia and research are associated with communication, interpersonal relationships and ambiguous expectations”, write engineering dean Marisa Chrysochoou and astrophysicist Keivan Stassun, the director of the Frist Center for Autism and Innovation. The authors explore how generative AI tools can support students with those aspects of their scientific careers — and the drawbacks.

Nature | 10 min read

“My field of ecology teaches us that human lives are not merely supported by nature: they are entangled with it, emerge from it, are enmeshed in it, nourished by it, and dependent on it in countless ways, from local to planetary,” writes Yadvinder Malhi in an exploration of how to better integrate this fundamental truth into our measures of human success. Last year, Mahli and colleagues proposed to achieve just that with the ‘Nature Relationship Index’, which the UN will report annually, starting in later this year. “We believe flourishing is possible for both us and the nonhuman natural world,” he writes.

Aeon | 19 min read

Reference: Nature paper (from 2025)

This one’s for the Briefing readers (and friends) who are 12 or younger. The European Space Agency is giving one budding artist the chance to bedeck the nose of the Ariane 6 rocket that will carry the exoplanet-seeking Plato spacecraft into orbit next year. The deadline is 6 July, so get sketching — 12 of the best drawings will also feature in a free-to-download Plato calendar, and all participants will get a certificate.

Thanks for reading,

Flora Graham, chief editor, Nature Briefing

With contributions by Jacob Smith

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