Yuan, S. et al. Cryo-EM structure of a herpesvirus capsid at 3.1 Å. Science 360, eaao7283 (2018).
Lawson, D. M. et al. Solving the structure of human H ferritin by genetically engineering intermolecular crystal contacts. Nature 349, 541–544 (1991).
Liu, Y., Zhao, W., Chen, C.-H. & Flood, A. H. Chloride capture using a C–H hydrogen-bonding cage. Science 365, 159–161 (2019).
Du, C., Li, Z., Zhu, X., Ouyang, G. & Liu, M. Hierarchically self-assembled homochiral helical microtoroids. Nat. Nanotechnol. 17, 1294–1302 (2022).
Raguram, A., Sasisekharan, V. & Sasisekharan, R. A chiral pentagonal polyhedral framework for characterizing virus capsid structures. Trends Microbiol. 25, 438–446 (2017).
Jacques, D. A. et al. HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis. Nature 536, 349–353 (2016).
Minten, I. J., Hendriks, L. J. A., Nolte, R. J. M. & Cornelissen, J. J. L. M. Controlled encapsulation of multiple proteins in virus capsids. J. Am. Chem. Soc. 131, 17771–17773 (2009).
Yamashita, M. & Engelman, A. N. Capsid-dependent host factors in HIV-1 infection. Trends Microbiol. 25, 741–755 (2017).
MacGillivray, L. R. & Atwood, J. L. A chiral spherical molecular assembly held together by 60 hydrogen bonds. Nature 389, 469–472 (1997).
Olenyuk, B., Whiteford, J. A., Fechtenkötter, A. & Stang, P. J. Self-assembly of nanoscale cuboctahedra by coordination chemistry. Nature 398, 796–799 (1999).
Sun, Q.-F. et al. Self-assembled M24L48 polyhedra and their sharp structural switch upon subtle ligand variation. Science 328, 1144–1147 (2010).
Chakrabarty, R., Mukherjee, P. S. & Stang, P. J. Supramolecular coordination: self-assembly of finite two- and three-dimensional ensembles. Chem. Rev. 111, 6810–6918 (2011).
Wang, H. et al. Hierarchical self-assembly of nanowires on the surface by metallo-supramolecular truncated cuboctahedra. J. Am. Chem. Soc. 143, 5826–5835 (2021).
Bierschenk, S. M. et al. Impact of host flexibility on selectivity in a supramolecular host-catalyzed enantioselective aza-Darzens reaction. J. Am. Chem. Soc. 144, 11425–11433 (2022).
Wu, K. et al. Systematic construction of progressively larger capsules from a fivefold linking pyrrole-based subcomponent. Nat. Synth. 2, 789–797 (2023).
Gu, Y. et al. Photoswitching topology in polymer networks with metal–organic cages as crosslinks. Nature 560, 65–69 (2018).
Zhang, D., Ronson, T. K., Zou, Y.-Q. & Nitschke, J. R. Metal–organic cages for molecular separations. Nat. Rev. Chem. 5, 168–182 (2021).
Liu, Y., Hu, C., Comotti, A. & Ward, M. D. Supramolecular Archimedean cages assembled with 72 hydrogen bonds. Science 333, 436–440 (2011).
Fujita, D. et al. Self-assembly of tetravalent Goldberg polyhedra from 144 small components. Nature 540, 563–566 (2016).
Beaudoin, D., Rominger, F. & Mastalerz, M. Chirality-assisted synthesis of a very large octameric hydrogen-bonded capsule. Angew. Chem. Int. Ed. 55, 15599–15603 (2016).
Chen, Y.-S. et al. Chemical mimicry of viral capsid self-assembly via corannulene-based pentatopic tectons. Nat. Commun. 10, 3443 (2019).
Wu, T. et al. Supramolecular triangular orthobicupola: self-assembly of a giant Johnson solid J27. Chem 7, 2429–2441 (2021).
Huang, Y.-H. et al. Dynamic metallosupramolecular cages containing 12 adaptable pockets for high-order guest binding beyond biomimicry. J. Am. Chem. Soc. 145, 23361–23371 (2023).
Benchimol, E., Tessarolo, J. & Clever, G. H. Photoswitchable coordination cages. Nat. Chem. 16, 13–21 (2024).
Kang, J., Santamaría, J., Hilmersson, G. & Rebek, J. Jr. Self-assembled molecular capsule catalyzes a Diels–Alder reaction. J. Am. Chem. Soc. 120, 7389–7390 (1998).
Fujita, D. et al. Protein stabilization and refolding in a gigantic self-assembled cage. Chem 7, 2672–2683 (2021).
Irie, M. & Mohri, M. Thermally irreversible photochromic systems. Reversible photocyclization of diarylethene derivatives. J. Org. Chem. 53, 803–808 (1988).
Irie, M., Fukaminato, T., Matsuda, K. & Kobatake, S. Photochromism of diarylethene molecules and crystals: memories, switches, and actuators. Chem. Rev. 114, 12174–12277 (2014).
Zheng, Z. et al. Digital photoprogramming of liquid-crystal superstructures featuring intrinsic chiral photoswitches. Nat. Photon. 16, 226–234 (2022).
Yamaguchi, T., Uchida, K. & Irie, M. Asymmetric photocyclization of diarylethene derivatives. J. Am. Chem. Soc. 119, 6066–6071 (1997).
de Jong, J. J. D., Lucas, L. N., Kellogg, R. M., van Esch, J. H. & Feringa, B. L. Reversible optical transcription of supramolecular chirality into molecular chirality. Science 304, 278–281 (2004).
Felsche, J., Luger, S. & Baerlocher, C. Crystal structures of the hydro-sodalite Na6[AlSiO4]6•8H2O and of the anhydrous sodalite Na6[AlSiO4]6. Zeolites 6, 367–372 (1986).
Hayashi, H., Côté, A. P., Furukawa, H., O’Keeffe, M. & Yaghi, O. M. Zeolite A imidazolate frameworks. Nat. Mater. 6, 501–506 (2007).
Huybers, P. Form generation of polyhedric building shapes. Int. J. Space Struct. 11, 173–181 (1996).
Malay, A. D. et al. An ultra-stable gold-coordinated protein cage displaying reversible assembly. Nature 569, 438–442 (2019).
Boubekri, R. et al. Raman study of a photochromic diarylethene molecule: a combined theoretical and experimental study. J. Raman Spectrosc. 44, 1777–1785 (2013).
Michel, J. P. et al. Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength. Proc. Natl Acad. Sci. USA 103, 6184–6189 (2006).
