Thursday, November 14, 2024
No menu items!
HomeNatureAlphaFold3 is now open source

AlphaFold3 is now open source

Hello Nature readers, would you like to get this Briefing in your inbox free every day? Sign up here.

Animation of mouse embryo slices at different time stages using Spateo, a 3D spatiotemporal modelling framework, showing intricate structures of every major organ of the whole embryo.

The team recorded the behaviour of a total of 7.8 million cells in a mouse embryo at 9.5 and 11.5 days after fertilization — a time when most mouse organs are forming. (X. Qiu et al./Cell)

Researchers have created the most detailed 3D cellular map yet of a mouse embryo, visualizing close to eight million cells. The map shows how cells interact and migrate in an embryo less than two weeks after conception, revealing the structures of every major organ developing in the embryo, from the brain to the heart and the spinal cord. Such maps could be created for any species, including human embryos, and could help researchers to identify causes of congenital diseases.

Nature | 3 min read

Reference: Cell paper

The code underlying the Nobel-prize-winning tool for modelling protein structures is open at last. Scientists can now download the software code for AlphaFold3 and use the artificial intelligence tool for non-commercial applications. The initial publication, six months ago, of AlphaFold3 without its code drew criticisms from scientists, who said the move undermined reproducibility. AlphaFold3 is capable of modelling proteins in concert with other molecules.

Nature | 4 min read

Efforts to adopt blood tests and brain scans to diagnose Alzheimer’s disease have fuelled controversy among scientists. Advocates of the tests say that biomarkers can indicate Alzheimer’s at an early stage, when any treatments that are developed to reverse the disease are more likely to be effective. Critics worry that these tests might cause unnecessary anxiety. “There’s a risk of misunderstanding and distress that individuals who are asymptomatic will have if we tell them they have Alzheimer’s, whereas nothing will happen in their lifetime in a majority of cases,” says neurologist Nicolas Villain.

Nature | 5 min read

Reference: JAMA Neurology paper

COP29, Trump and the goal of 1.5 ℃

During his last term as US president, Donald Trump pulled the United States out of the 2015 Paris climate agreement — but that lasted only two months before President Joe Biden rejoined. This time, the expectation that Trump will abandon the agreement earlier in his four-year term has cast a shadow over the 29th UN climate conference of the parties (COP29) happening this week in Baku, Azerbaijan. Without the US on board, it will be more difficult to negotiate an agreement to help poor countries respond to climate change. Other nations might be emboldened to weaken their commitments, and there is little hope that the US will increase its own lacklustre contributions to the pot.

Nature | 6 min read

A study of Antarctic ice cores argues that, in 2023, human-driven warming reached 1.49 °C above pre-industrial levels. This is perilously close to the ambitious target of the Paris climate agreement: to limit global temperatures to less than 1.5 °C. The usual measure of this somewhat nebulous metric uses temperatures between 1850 and 1900 as its ‘pre-industrial’ baseline. But carbon dioxide levels and temperatures were increasing long before 1850. The new study used ice-core data to establish a pre-industrial baseline from AD 13 to 1700, a period when CO2 levels were around 280 parts per million and relatively stable. Other methods for calculating global temperature change, such as long-lived marine sponges, suggest warming has even passed 1.5 °C.

Nature | 4 min read

Reference: Nature Geoscience paper

Features & opinion

Designing bionic prosthetics that fully restore the function of lost limbs hinges on accurately replicating somatosensation — the collection of senses that interpret touch, temperature, pain and body position. Neuroengineer Giacomo Valle has been tweaking electrical impulses that cause feelings of texture and pressure, and others have created warm and cool sensations in “phantom” hands. Engineer Hugh Herr, however, argues that the sense of embodiment — users feeling like the prosthetic is a part of their body, not just an artificial attachment — is most important.

Nature | 12 min read

The heavily pixellated male figure that featured in a 1974 broadcast to the stars from the Arecibo Observatory might seem a sexist choice, but historian Rebecca Charbonneau argues that it deserves a more subtle interpretation. “The messages that humanity sends to extraterrestrial intelligences are not just scientific artefacts, but also works of art that reveal much about the people who created them,” she writes. “They serve as a cosmic mirror, reflecting both our aspirations for universality and the limitations of our perspective.”

Nature | 10 min read

Where I work

Legena Henry collects sargassum on the shoreline of Barbados, to be processed into biomass fuel.

Legena Henry is a mechanical engineer at the University of the West Indies at Cave Hill in Barbados and the chief executive of Rum & Sargassum.Credit: Micah B Rubin for Nature

Mechanical engineer Legena Henry co-founded a Barbadian company that makes renewable biofuels from rum-distillery waste water and sargassum, a seaweed that washes up on the beaches. She estimates that converting around 75% of the vehicles on the island nation to run on this biofuel could halve the cost of fuel for Barbadians and slash carbon emissions. “All the islands in this region of the Caribbean have a sargassum problem and a rum wastewater problem — and ultimately a climate-change problem,” she says. “This solution is a win–win–win.” (Nature | 3 min read)

QUOTE OF THE DAY

Planetary scientist Linda Spilker worked on NASA’s Voyager programme when Voyager 2 sent back data from Uranus, showing that it had an unusually distorted magnetic field. New analysis of the almost 40-year old data hints that the moons of Uranus could have the necessary conditions to support life, and that the initial fly-by caught the planet on an off day. (BBC | 5 min read)

Reference: Nature Astronomy paper

Happy New Year! If you’re a Martian, that is. Today is the day that we turn the page from Mars year 37 to year 38.

Phew, well done for making it through the last 668 sols. Here’s hoping that 38 is our year. Help ensure it is by emailing your feedback on this newsletter to [email protected].

Thanks for reading,

Flora Graham, senior editor, Nature Briefing

With contributions by Jacob Smith and Smriti Mallapaty

Want more? Sign up to our other free Nature Briefing newsletters:

Nature Briefing: Careers — insights, advice and award-winning journalism to help you optimize your working life

Nature Briefing: Microbiology — the most abundant living entities on our planet — microorganisms — and the role they play in health, the environment and food systems

Nature Briefing: Anthropocene — climate change, biodiversity, sustainability and geoengineering

Nature Briefing: AI & Robotics — 100% written by humans, of course

Nature Briefing: Cancer — a weekly newsletter written with cancer researchers in mind

Nature Briefing: Translational Research — covers biotechnology, drug discovery and pharma

RELATED ARTICLES

Most Popular

Recent Comments